Biocomputing Bootcamp
Day 1 Day 2 Day 3 Practice - Solutions for Practice Examples III-2. Accessing aligned sequence reads in SAM/BAM format III-4. Working with BED files. III-1. Understanding how to access FASTA files I-1 Exploring FASTQ files in UNIX. III-3. Representing genes and transcripts using GTF and genePred format V-1. Download example dataset and notebooks V-2. Download example dataset and notebooks III-1. Working with VCF files. III-2. Subsetting VCF files Day 3 V-1. Download example dataset and notebooks Day 4 Day 5 Introduction to Biocomputing 2015 (BIOS/BIOI/HG 606) Setup Introducing the Shell

V-2. Download example dataset and notebooks

Reference links:

  • matplotlib project homepage

  • matplotlib tutorial

  • matplotlib gallery

pyplot - a MATLAB-like set of commands for using matplotlib

  • pyplot quick reference

Other useful plotting libraries (not covered here):

  • seaborn

  • ggplot2 for R

  • ggplot2 ported to python

Bootcamp Instructors

  • Barry Grant
  • Hui Jiang
  • Ryan Mills
  • Ken Weiss
  • Jeff de Wet
  • Jeff Kidd
  • Hyun Min Kang
  • Jacob Kitzman
  • bioboot
  • bioboot

A short course at the University of Michigan introducing computational tools, techniques and best practices that foster reproducible research in bioinformatics, genome informatics and biostatistics.