Package index • bio3dview

Key functions

The main view functions

These functions are used to generate 3D views of distinct bio3d objects and their related or derived data.

view.pdb() view.old(): Interactive PDB Viewing

view.pdbs(): Interactive PDBS Viewing

view.pca() view.nma(): Quick molecular viewing of bio3d PCA results

Utility functions

Conversion functions

These functions are used to convert bio3 objects for input to NGLVieweR.

pdb2string(): Convert a PDB Object to a Character String

pdbs2string(): Convert PDBS to Multi-Element Character Strings

pca2string(): Convert a bio3d PCA or NMA object to a character vector for NGLVieweR input

Internal functions

These functions are used to check user specified color and graphic representation style keyword options against those allowed by NGL.

color_key_match(): Internal utility function for matching available NGL colorSchemes

style_key_match(): Internal utility function for matching available NGL representations

Deprecated functions

pdb2ngl() deprecated: Convert a bio3d PDB object for NGLVieweR

view.pdbs2() deprecated: Quick interactive PDBS object viewing using NGLVieweR